PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D01G0081
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 242aa    MW: 27282.5 Da    PI: 7.5597
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D01G0081genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.49.1e-20954147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEdell ++v+++G+++W+ I+  ++ gR++k+c++rw + 
      Gh_D01G0081  9 RGPWSPEEDELLRKLVQRYGPRNWTVISTSIP-GRSGKSCRLRWCNQ 54
                     89******************************.***********985 PP

2Myb_DNA-binding55.51.3e-1763105347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEd ++ +a++++G++ W+tIar ++ gRt++ +k++w++ 
      Gh_D01G0081  63 AFTAEEDRIIRKAHALYGNK-WATIARLLN-GRTDNAVKNHWNST 105
                      79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.255459IPR017930Myb domain
SuperFamilySSF466891.54E-316102IPR009057Homeodomain-like
SMARTSM007175.8E-17857IPR001005SANT/Myb domain
PfamPF002491.8E-19954IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-251061IPR009057Homeodomain-like
CDDcd001671.27E-141153No hitNo description
SMARTSM007171.9E-1560108IPR001005SANT/Myb domain
PROSITE profilePS5129421.07461110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2262110IPR009057Homeodomain-like
CDDcd001673.71E-1163106No hitNo description
PfamPF002498.3E-1563105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGQDIDRVRG PWSPEEDELL RKLVQRYGPR NWTVISTSIP GRSGKSCRLR WCNQLSPEVE  60
HRAFTAEEDR IIRKAHALYG NKWATIARLL NGRTDNAVKN HWNSTLKRKF IEDSESEKKP  120
AKSQRTASSS SPSRSDANDL GLGVVADELS QCSRVSTKLT LRSSWNESVD LNNDDDHLSK  180
ENDLKLTAEK HENDSSATVA AAMLPPEILA AIKEMIKKEV RDYMEEFGFK SESVKNAVGN  240
IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-4181103105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-41811057159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-41811057159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-4181103105C-Myb DNA-Binding Domain
1msf_C2e-4181103105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012450714.11e-167PREDICTED: transcription factor MYB44-like isoform X4
RefseqXP_012450704.11e-167PREDICTED: transcription factor MYB44-like isoform X3
RefseqXP_012450695.11e-167PREDICTED: transcription factor MYB44-like isoform X2
SwissprotQ9FDW11e-63MYB44_ARATH; Transcription factor MYB44
TrEMBLA0A0D2PYV41e-163A0A0D2PYV4_G
STRINGPOPTR_0009s09890.15e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2426934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-64myb domain protein r1